Index

_

__deepcopy__() (DeepDict method) __hash__() (DatasetInfo method) __new__() (OpenEphysRecordingInterface static method) __str__() (BackendConfiguration method) (DatasetInfo method) (DatasetIOConfiguration method) _check_parameter_dtype_consistency() (in module neuroconv.tools.testing.mock_ttl_signals) _create_imaging_plane_from_metadata() (in module neuroconv.tools.roiextractors.roiextractors) _create_roi_table_region() (in module neuroconv.tools.roiextractors.roiextractors) _dict_intersection() (in module neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface) _get_data() (ImagingExtractorDataChunkIterator method) (SpikeInterfaceRecordingDataChunkIterator method)

_get_default_chunk_shape() (ImagingExtractorDataChunkIterator method) (SpikeInterfaceRecordingDataChunkIterator method) _get_dtype() (ImagingExtractorDataChunkIterator method) (SpikeInterfaceRecordingDataChunkIterator method) _get_maxshape() (ImagingExtractorDataChunkIterator method) (SpikeInterfaceRecordingDataChunkIterator method) _get_scaled_buffer_shape() (ImagingExtractorDataChunkIterator method) _get_segmentation_data_interface() (in module neuroconv.tools.roiextractors.roiextractors) _imaging_frames_to_hdmf_iterator() (in module neuroconv.tools.roiextractors.roiextractors) _NWBZarrIO (in module neuroconv.tools.nwb_helpers) _recording_traces_to_hdmf_iterator() (in module neuroconv.tools.spikeinterface.spikeinterface) _update_metadata_links_for_plane_segmentation_name() (in module neuroconv.datainterfaces.ophys.suite2p.suite2pdatainterface)

A

AbfInterface (class in neuroconv.datainterfaces.icephys.abf.abfdatainterface) AbstractPathExpander (class in neuroconv.tools.path_expansion) add_channel_metadata_to_nwb() (BaseSortingExtractorInterface method) add_channel_metadata_to_recoder() (in module neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) add_channel_metadata_to_recorder_from_channel_map_file() (in module neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) add_channel_metadata_to_recorder_from_session_file() (in module neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) add_device_from_metadata() (in module neuroconv.tools.nwb_helpers) add_devices() (in module neuroconv.tools.roiextractors.roiextractors) (in module neuroconv.tools.spikeinterface.spikeinterface) add_electrical_series() (in module neuroconv.tools.spikeinterface.spikeinterface) add_electrode_groups() (in module neuroconv.tools.spikeinterface.spikeinterface) add_electrodes() (in module neuroconv.tools.spikeinterface.spikeinterface) add_electrodes_info() (in module neuroconv.tools.spikeinterface.spikeinterface) add_fluorescence_traces() (in module neuroconv.tools.roiextractors.roiextractors) add_icephys_electrode() (in module neuroconv.tools.neo.neo) add_icephys_recordings() (in module neuroconv.tools.neo.neo) add_image_segmentation() (in module neuroconv.tools.roiextractors.roiextractors) add_imaging_plane() (in module neuroconv.tools.roiextractors.roiextractors) add_neo_to_nwb() (in module neuroconv.tools.neo.neo) add_photon_series() (in module neuroconv.tools.roiextractors.roiextractors) add_plane_segmentation() (in module neuroconv.tools.roiextractors.roiextractors) add_recording_extractor_properties() (in module neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface) (in module neuroconv.datainterfaces.ecephys.spikeglx.spikeglxdatainterface) add_summary_images() (in module neuroconv.tools.roiextractors.roiextractors) add_to_nwbfile() (AudioInterface method) (AxonaPositionDataInterface method) (BaseIcephysInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BaseSortingExtractorInterface method) (CellExplorerLFPInterface method) (DeepLabCutInterface method) (FicTracDataInterface method) (SLEAPInterface method) (Suite2pSegmentationInterface method) (TimeIntervalsInterface method) (VideoInterface method)

add_units_table() (in module neuroconv.tools.spikeinterface.spikeinterface) add_waveforms() (in module neuroconv.tools.spikeinterface.spikeinterface) align_by_interpolation() (AudioInterface method) (BaseIcephysInterface method) (BaseRecordingExtractorInterface method) (BaseTemporalAlignmentInterface method) append_replace_dict_in_list() (in module neuroconv.utils.dict) AudioInterface (class in neuroconv.datainterfaces.behavior.audio.audiointerface) AudioInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) auto_install_maxwell_hdf5_compression_plugin() (MaxOneRecordingInterface static method) automatic_dandi_upload() (in module neuroconv.tools.data_transfers) AxonaLFPDataInterface (class in neuroconv.datainterfaces.ecephys.axona.axonadatainterface) AxonaPositionDataInterface (class in neuroconv.datainterfaces.ecephys.axona.axonadatainterface) AxonaRecordingInterface (class in neuroconv.datainterfaces.ecephys.axona.axonadatainterface) AxonaUnitRecordingInterface (class in neuroconv.datainterfaces.ecephys.axona.axonadatainterface)

B

BackendConfiguration (class in neuroconv.tools.nwb_helpers) BaseDataInterface (class in neuroconv.basedatainterface) BaseIcephysInterface (class in neuroconv.datainterfaces.icephys.baseicephysinterface) BaseImagingExtractorInterface (class in neuroconv.datainterfaces.ophys.baseimagingextractorinterface) BaseRecordingExtractorInterface (class in neuroconv.datainterfaces.ecephys.baserecordingextractorinterface) BaseSegmentationExtractorInterface (class in neuroconv.datainterfaces.ophys.basesegmentationextractorinterface)

BaseSortingExtractorInterface (class in neuroconv.datainterfaces.ecephys.basesortingextractorinterface) BaseTemporalAlignmentInterface (class in neuroconv.basetemporalalignmentinterface) BiocamRecordingInterface (class in neuroconv.datainterfaces.ecephys.biocam.biocamdatainterface) BlackrockRecordingInterface (class in neuroconv.datainterfaces.ecephys.blackrock.blackrockdatainterface) BlackrockSortingInterface (class in neuroconv.datainterfaces.ecephys.blackrock.blackrockdatainterface) BrukerTiffMultiPlaneConverter (class in neuroconv.datainterfaces.ophys.brukertiff.brukertiffconverter) BrukerTiffSinglePlaneConverter (class in neuroconv.datainterfaces.ophys.brukertiff.brukertiffconverter)

C

CaimanSegmentationInterface (class in neuroconv.datainterfaces.ophys.caiman.caimandatainterface) CellExplorerLFPInterface (class in neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) CellExplorerRecordingInterface (class in neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) CellExplorerSortingInterface (class in neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface) check_extracted_metadata() (DataInterfaceTestMixin method) check_if_imaging_fits_into_memory() (in module neuroconv.tools.roiextractors.roiextractors) check_if_recording_traces_fit_into_memory() (in module neuroconv.tools.spikeinterface.spikeinterface) check_interface_get_original_timestamps() (DeepLabCutInterfaceMixin method) (TemporalAlignmentMixin method) check_interface_get_timestamps() (DeepLabCutInterfaceMixin method) (TemporalAlignmentMixin method) check_interface_original_timestamps_inmutability() (DeepLabCutInterfaceMixin method) (RecordingExtractorInterfaceTestMixin method) (TemporalAlignmentMixin method) (VideoInterfaceMixin method) check_interface_set_aligned_timestamps() (DeepLabCutInterfaceMixin method) (RecordingExtractorInterfaceTestMixin method) (TemporalAlignmentMixin method) (VideoInterfaceMixin method)

check_nwbfile_temporal_alignment() (DeepLabCutInterfaceMixin method) (ImagingExtractorInterfaceTestMixin method) (TemporalAlignmentMixin method) (VideoInterfaceMixin method) check_read_nwb() (AudioInterfaceTestMixin method) (DataInterfaceTestMixin method) (ImagingExtractorInterfaceTestMixin method) (MiniscopeImagingInterfaceMixin method) (RecordingExtractorInterfaceTestMixin method) (SortingExtractorInterfaceTestMixin method) (VideoInterfaceMixin method) check_shift_timestamps_by_start_time() (DeepLabCutInterfaceMixin method) (RecordingExtractorInterfaceTestMixin method) (TemporalAlignmentMixin method) (VideoInterfaceMixin method) CnmfeSegmentationInterface (class in neuroconv.datainterfaces.ophys.cnmfe.cnmfedatainterface) configure_backend() (in module neuroconv.tools.nwb_helpers) ConverterPipe (class in neuroconv.nwbconverter) CsvTimeIntervalsInterface (class in neuroconv.datainterfaces.text.csv.csvtimeintervalsinterface)

D

DataInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) DatasetInfo (class in neuroconv.tools.nwb_helpers) DatasetIOConfiguration (class in neuroconv.tools.nwb_helpers) DeepDict (class in neuroconv.utils.dict)

DeepLabCutInterface (class in neuroconv.datainterfaces.behavior.deeplabcut.deeplabcutdatainterface) DeepLabCutInterfaceMixin (class in neuroconv.tools.testing.data_interface_mixins) default() (NWBMetaDataEncoder method) dict_deep_update() (in module neuroconv.utils.dict)

E

EDFRecordingInterface (class in neuroconv.datainterfaces.ecephys.edf.edfdatainterface) estimate_s3_conversion_cost() (in module neuroconv.tools.data_transfers) estimate_total_conversion_runtime() (in module neuroconv.tools.data_transfers) ExcelTimeIntervalsInterface (class in neuroconv.datainterfaces.text.excel.exceltimeintervalsinterface) exist_dict_in_list() (in module neuroconv.utils.dict)

expand_paths() (AbstractPathExpander method) extract_metadata() (AbstractPathExpander method) extract_neo_header_metadata() (in module neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface) extract_session_start_time() (in module neuroconv.datainterfaces.behavior.fictrac.fictracdatainterface) ExtractSegmentationInterface (class in neuroconv.datainterfaces.ophys.extract.extractdatainterface)

F

FicTracDataInterface (class in neuroconv.datainterfaces.behavior.fictrac.fictracdatainterface)

fill_defaults() (in module neuroconv.utils.json_schema) filter_non_neural_channels() (in module neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface)

G

generate_mock_ttl_signal() (in module neuroconv.tools.testing.mock_ttl_signals) generate_path_expander_demo_ibl() (in module neuroconv.tools.testing.mock_files) get_all_channels_info() (Spike2RecordingInterface class method) get_base_schema() (in module neuroconv.utils.json_schema) get_channel_names() (SpikeGLXNIDQInterface method) get_command_traces() (in module neuroconv.tools.neo.neo) get_conversion_from_unit() (in module neuroconv.tools.neo.neo) get_conversion_options_schema() (BaseDataInterface method) (BrukerTiffMultiPlaneConverter method) (BrukerTiffSinglePlaneConverter method) (ConverterPipe method) (LightningPoseConverter method) (MiniscopeConverter method) (NWBConverter method) (SpikeGLXConverterPipe method) get_data_io_kwargs() (DatasetIOConfiguration method) (HDF5DatasetIOConfiguration method) (ZarrDatasetIOConfiguration method) get_default_backend_configuration() (in module neuroconv.tools.nwb_helpers) get_default_dataset_io_configurations() (in module neuroconv.tools.nwb_helpers) get_default_nwbfile_metadata() (in module neuroconv.tools.nwb_helpers) get_default_ophys_metadata() (in module neuroconv.tools.roiextractors.roiextractors) get_default_segmentation_metadata() (in module neuroconv.tools.roiextractors.roiextractors) get_ecephys_metadata() (NeuroScopeRecordingInterface static method) get_electrode_table_json() (BaseRecordingExtractorInterface method) get_electrodes_metadata() (in module neuroconv.tools.neo.neo) get_event_times_from_ttl() (SpikeGLXNIDQInterface method) get_falling_frames_from_ttl() (in module neuroconv.tools.signal_processing) get_globus_dataset_content_sizes() (in module neuroconv.tools.data_transfers) get_metadata() (AbfInterface method) (AudioInterface method) (AxonaRecordingInterface method) (BaseDataInterface method) (BaseIcephysInterface method) (BaseImagingExtractorInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BlackrockRecordingInterface method) (BlackrockSortingInterface method) (CellExplorerSortingInterface method) (DeepLabCutInterface method) (EDFRecordingInterface method) (FicTracDataInterface method) (IntanRecordingInterface method) (LightningPoseConverter method) (MaxOneRecordingInterface method) (MEArecRecordingInterface method) (MicroManagerTiffImagingInterface method) (MockImagingInterface method) (MockRecordingInterface method) (NeuralynxRecordingInterface method) (NeuroScopeLFPInterface method) (NeuroScopeRecordingInterface method) (NeuroScopeSortingInterface method) (NWBConverter method) (PlexonRecordingInterface method) (PlexonSortingInterface method) (SbxImagingInterface method) (ScanImageImagingInterface method) (SpikeGLXNIDQInterface method) (SpikeGLXRecordingInterface method) (Suite2pSegmentationInterface method) (TimeIntervalsInterface method) (VideoInterface method) get_metadata_schema() (AudioInterface method) (BaseDataInterface method) (BaseIcephysInterface method) (BaseImagingExtractorInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BaseSortingExtractorInterface method) (IntanRecordingInterface method) (NWBConverter method) (TimeIntervalsInterface method) (VideoInterface method)

get_module() (in module neuroconv.tools.nwb_helpers) get_nspikes() (in module neuroconv.tools.spikeinterface.spikeinterface) get_number_of_electrodes() (in module neuroconv.tools.neo.neo) get_number_of_segments() (in module neuroconv.tools.neo.neo) get_nwb_imaging_metadata() (in module neuroconv.tools.roiextractors.roiextractors) get_nwb_metadata() (in module neuroconv.tools.neo.neo) (in module neuroconv.tools.spikeinterface.spikeinterface) get_nwb_segmentation_metadata() (in module neuroconv.tools.roiextractors.roiextractors) get_original_timestamps() (AudioInterface method) (BaseIcephysInterface method) (BaseImagingExtractorInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BaseSortingExtractorInterface method) (BaseTemporalAlignmentInterface method) (CellExplorerRecordingInterface method) (DeepLabCutInterface method) (FicTracDataInterface method) (MockBehaviorEventInterface method) (NeuroScopeRecordingInterface method) (SLEAPInterface method) (SpikeGLXRecordingInterface method) (VideoInterface method) get_rising_frames_from_ttl() (in module neuroconv.tools.signal_processing) get_schema_from_hdmf_class() (in module neuroconv.utils.json_schema) get_schema_from_method_signature() (in module neuroconv.utils.json_schema) get_source_schema() (AbfInterface class method) (AxonaLFPDataInterface class method) (AxonaPositionDataInterface class method) (AxonaUnitRecordingInterface class method) (BaseDataInterface class method) (BaseIcephysInterface class method) (BlackrockRecordingInterface class method) (BlackrockSortingInterface class method) (BrukerTiffMultiPlaneConverter class method) (BrukerTiffSinglePlaneConverter class method) (ConverterPipe method) (LightningPoseConverter class method) (MicroManagerTiffImagingInterface class method) (MiniscopeConverter class method) (MockBehaviorEventInterface class method) (MockSpikeGLXNIDQInterface class method) (NWBConverter class method) (ScanImageImagingInterface class method) (Spike2RecordingInterface class method) (SpikeGadgetsRecordingInterface class method) (SpikeGLXConverterPipe class method) (SpikeGLXNIDQInterface class method) (SpikeGLXRecordingInterface class method) (TiffImagingInterface class method) get_start_datetime() (in module neuroconv.datainterfaces.icephys.abf.abfdatainterface) get_timestamps() (AudioInterface method) (BaseIcephysInterface method) (BaseImagingExtractorInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BaseSortingExtractorInterface method) (BaseTemporalAlignmentInterface method) (DeepLabCutInterface method) (FicTracDataInterface method) (MockBehaviorEventInterface method) (SLEAPInterface method) (VideoInterface method) get_timing_type() (VideoInterface method)

H

has_probe() (BaseRecordingExtractorInterface method) HDF5BackendConfiguration (class in neuroconv.tools.nwb_helpers)

HDF5DatasetIOConfiguration (class in neuroconv.tools.nwb_helpers) Hdf5ImagingInterface (class in neuroconv.datainterfaces.ophys.hdf5.hdf5datainterface)

I

ImagingExtractorDataChunkIterator (class in neuroconv.tools.roiextractors.imagingextractordatachunkiterator)

ImagingExtractorInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) IntanRecordingInterface (class in neuroconv.datainterfaces.ecephys.intan.intandatainterface)

K

KiloSortSortingInterface (class in neuroconv.datainterfaces.ecephys.kilosort.kilosortdatainterface)

L

LightningPoseConverter (class in neuroconv.datainterfaces.behavior.lightningpose.lightningposeconverter) list_directory() (AbstractPathExpander method) (LocalPathExpander method)

load_dict_from_file() (in module neuroconv.utils.dict) LocalPathExpander (class in neuroconv.tools.path_expansion)

M

make_nwbfile_from_metadata() (in module neuroconv.tools.nwb_helpers) make_or_load_nwbfile() (in module neuroconv.tools.nwb_helpers) MaxOneRecordingInterface (class in neuroconv.datainterfaces.ecephys.maxwell.maxonedatainterface) MEArecRecordingInterface (class in neuroconv.datainterfaces.ecephys.mearec.mearecdatainterface) MicroManagerTiffImagingInterface (class in neuroconv.datainterfaces.ophys.micromanagertiff.micromanagertiffdatainterface) MiniscopeConverter (class in neuroconv.datainterfaces.ophys.miniscope.miniscopeconverter) MiniscopeImagingInterfaceMixin (class in neuroconv.tools.testing.data_interface_mixins) MockBehaviorEventInterface (class in neuroconv.tools.testing.mock_interfaces) MockImagingInterface (class in neuroconv.tools.testing.mock_interfaces) MockRecordingInterface (class in neuroconv.tools.testing.mock_interfaces) MockSpikeGLXNIDQInterface (class in neuroconv.tools.testing.mock_interfaces) module neuroconv.basedatainterface neuroconv.basetemporalalignmentinterface neuroconv.datainterfaces.behavior.audio.audiointerface neuroconv.datainterfaces.behavior.deeplabcut.deeplabcutdatainterface neuroconv.datainterfaces.behavior.fictrac.fictracdatainterface neuroconv.datainterfaces.behavior.lightningpose.lightningposeconverter neuroconv.datainterfaces.behavior.sleap.sleapdatainterface neuroconv.datainterfaces.behavior.video.videodatainterface neuroconv.datainterfaces.ecephys.axona.axonadatainterface neuroconv.datainterfaces.ecephys.baserecordingextractorinterface neuroconv.datainterfaces.ecephys.basesortingextractorinterface neuroconv.datainterfaces.ecephys.biocam.biocamdatainterface neuroconv.datainterfaces.ecephys.blackrock.blackrockdatainterface neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface neuroconv.datainterfaces.ecephys.edf.edfdatainterface neuroconv.datainterfaces.ecephys.intan.intandatainterface neuroconv.datainterfaces.ecephys.kilosort.kilosortdatainterface neuroconv.datainterfaces.ecephys.maxwell.maxonedatainterface neuroconv.datainterfaces.ecephys.mearec.mearecdatainterface neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface neuroconv.datainterfaces.ecephys.openephys.openephysdatainterface neuroconv.datainterfaces.ecephys.phy.phydatainterface neuroconv.datainterfaces.ecephys.plexon.plexondatainterface neuroconv.datainterfaces.ecephys.spike2.spike2datainterface neuroconv.datainterfaces.ecephys.spikegadgets.spikegadgetsdatainterface neuroconv.datainterfaces.ecephys.spikeglx.spikeglxconverter neuroconv.datainterfaces.ecephys.spikeglx.spikeglxdatainterface neuroconv.datainterfaces.ecephys.spikeglx.spikeglxnidqinterface neuroconv.datainterfaces.ecephys.tdt.tdtdatainterface neuroconv.datainterfaces.icephys.abf.abfdatainterface neuroconv.datainterfaces.icephys.baseicephysinterface neuroconv.datainterfaces.ophys.baseimagingextractorinterface neuroconv.datainterfaces.ophys.basesegmentationextractorinterface neuroconv.datainterfaces.ophys.brukertiff.brukertiffconverter neuroconv.datainterfaces.ophys.caiman.caimandatainterface neuroconv.datainterfaces.ophys.cnmfe.cnmfedatainterface neuroconv.datainterfaces.ophys.extract.extractdatainterface neuroconv.datainterfaces.ophys.hdf5.hdf5datainterface neuroconv.datainterfaces.ophys.micromanagertiff.micromanagertiffdatainterface neuroconv.datainterfaces.ophys.miniscope.miniscopeconverter neuroconv.datainterfaces.ophys.sbx.sbxdatainterface neuroconv.datainterfaces.ophys.scanimage.scanimageimaginginterface neuroconv.datainterfaces.ophys.sima.simadatainterface neuroconv.datainterfaces.ophys.suite2p.suite2pdatainterface neuroconv.datainterfaces.ophys.tiff.tiffdatainterface neuroconv.datainterfaces.text.csv.csvtimeintervalsinterface neuroconv.datainterfaces.text.excel.exceltimeintervalsinterface neuroconv.datainterfaces.text.timeintervalsinterface neuroconv.nwbconverter neuroconv.tools.data_transfers neuroconv.tools.neo.neo neuroconv.tools.nwb_helpers neuroconv.tools.path_expansion neuroconv.tools.roiextractors.imagingextractordatachunkiterator neuroconv.tools.roiextractors.roiextractors neuroconv.tools.signal_processing neuroconv.tools.spikeinterface.spikeinterface neuroconv.tools.spikeinterface.spikeinterfacerecordingdatachunkiterator neuroconv.tools.testing.data_interface_mixins neuroconv.tools.testing.mock_files neuroconv.tools.testing.mock_interfaces neuroconv.tools.testing.mock_ttl_signals neuroconv.tools.yaml_conversion_specification neuroconv.utils.dict neuroconv.utils.json_schema neuroconv.utils.types

N

NeuralynxRecordingInterface (class in neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface) NeuralynxSortingInterface (class in neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface) neuroconv.basedatainterface module neuroconv.basetemporalalignmentinterface module neuroconv.datainterfaces.behavior.audio.audiointerface module neuroconv.datainterfaces.behavior.deeplabcut.deeplabcutdatainterface module neuroconv.datainterfaces.behavior.fictrac.fictracdatainterface module neuroconv.datainterfaces.behavior.lightningpose.lightningposeconverter module neuroconv.datainterfaces.behavior.sleap.sleapdatainterface module neuroconv.datainterfaces.behavior.video.videodatainterface module neuroconv.datainterfaces.ecephys.axona.axonadatainterface module neuroconv.datainterfaces.ecephys.baserecordingextractorinterface module neuroconv.datainterfaces.ecephys.basesortingextractorinterface module neuroconv.datainterfaces.ecephys.biocam.biocamdatainterface module neuroconv.datainterfaces.ecephys.blackrock.blackrockdatainterface module neuroconv.datainterfaces.ecephys.cellexplorer.cellexplorerdatainterface module neuroconv.datainterfaces.ecephys.edf.edfdatainterface module neuroconv.datainterfaces.ecephys.intan.intandatainterface module neuroconv.datainterfaces.ecephys.kilosort.kilosortdatainterface module neuroconv.datainterfaces.ecephys.maxwell.maxonedatainterface module neuroconv.datainterfaces.ecephys.mearec.mearecdatainterface module neuroconv.datainterfaces.ecephys.neuralynx.neuralynxdatainterface module neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface module neuroconv.datainterfaces.ecephys.openephys.openephysdatainterface module neuroconv.datainterfaces.ecephys.phy.phydatainterface module neuroconv.datainterfaces.ecephys.plexon.plexondatainterface module neuroconv.datainterfaces.ecephys.spike2.spike2datainterface module neuroconv.datainterfaces.ecephys.spikegadgets.spikegadgetsdatainterface module neuroconv.datainterfaces.ecephys.spikeglx.spikeglxconverter module neuroconv.datainterfaces.ecephys.spikeglx.spikeglxdatainterface module neuroconv.datainterfaces.ecephys.spikeglx.spikeglxnidqinterface module neuroconv.datainterfaces.ecephys.tdt.tdtdatainterface module neuroconv.datainterfaces.icephys.abf.abfdatainterface module neuroconv.datainterfaces.icephys.baseicephysinterface module neuroconv.datainterfaces.ophys.baseimagingextractorinterface module neuroconv.datainterfaces.ophys.basesegmentationextractorinterface module neuroconv.datainterfaces.ophys.brukertiff.brukertiffconverter module

neuroconv.datainterfaces.ophys.caiman.caimandatainterface module neuroconv.datainterfaces.ophys.cnmfe.cnmfedatainterface module neuroconv.datainterfaces.ophys.extract.extractdatainterface module neuroconv.datainterfaces.ophys.hdf5.hdf5datainterface module neuroconv.datainterfaces.ophys.micromanagertiff.micromanagertiffdatainterface module neuroconv.datainterfaces.ophys.miniscope.miniscopeconverter module neuroconv.datainterfaces.ophys.sbx.sbxdatainterface module neuroconv.datainterfaces.ophys.scanimage.scanimageimaginginterface module neuroconv.datainterfaces.ophys.sima.simadatainterface module neuroconv.datainterfaces.ophys.suite2p.suite2pdatainterface module neuroconv.datainterfaces.ophys.tiff.tiffdatainterface module neuroconv.datainterfaces.text.csv.csvtimeintervalsinterface module neuroconv.datainterfaces.text.excel.exceltimeintervalsinterface module neuroconv.datainterfaces.text.timeintervalsinterface module neuroconv.nwbconverter module neuroconv.tools.data_transfers module neuroconv.tools.neo.neo module neuroconv.tools.nwb_helpers module neuroconv.tools.path_expansion module neuroconv.tools.roiextractors.imagingextractordatachunkiterator module neuroconv.tools.roiextractors.roiextractors module neuroconv.tools.signal_processing module neuroconv.tools.spikeinterface.spikeinterface module neuroconv.tools.spikeinterface.spikeinterfacerecordingdatachunkiterator module neuroconv.tools.testing.data_interface_mixins module neuroconv.tools.testing.mock_files module neuroconv.tools.testing.mock_interfaces module neuroconv.tools.testing.mock_ttl_signals module neuroconv.tools.yaml_conversion_specification module neuroconv.utils.dict module neuroconv.utils.json_schema module neuroconv.utils.types module NeuroScopeLFPInterface (class in neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface) NeuroScopeRecordingInterface (class in neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface) NeuroScopeSortingInterface (class in neuroconv.datainterfaces.ecephys.neuroscope.neuroscopedatainterface) NoDatesSafeLoader (class in neuroconv.utils.dict) NWBConverter (class in neuroconv.nwbconverter) NWBMetaDataEncoder (class in neuroconv.utils.json_schema)

O

OpenEphysRecordingInterface (class in neuroconv.datainterfaces.ecephys.openephys.openephysdatainterface)

P

parse_fictrac_config() (in module neuroconv.datainterfaces.behavior.fictrac.fictracdatainterface) PhySortingInterface (class in neuroconv.datainterfaces.ecephys.phy.phydatainterface)

PlexonRecordingInterface (class in neuroconv.datainterfaces.ecephys.plexon.plexondatainterface) PlexonSortingInterface (class in neuroconv.datainterfaces.ecephys.plexon.plexondatainterface)

R

RecordingExtractorInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) regenerate_test_cases() (in module neuroconv.tools.testing.mock_ttl_signals) remove_implicit_resolver() (NoDatesSafeLoader class method) run_conversion() (BaseDataInterface method) (BrukerTiffMultiPlaneConverter method) (BrukerTiffSinglePlaneConverter method) (LightningPoseConverter method) (MiniscopeConverter method) (NWBConverter method)

run_conversion_from_yaml() (in module neuroconv.tools.yaml_conversion_specification) run_custom_checks() (DataInterfaceTestMixin method)

S

SbxImagingInterface (class in neuroconv.datainterfaces.ophys.sbx.sbxdatainterface) ScanImageImagingInterface (class in neuroconv.datainterfaces.ophys.scanimage.scanimageimaginginterface) SegmentationExtractorInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) set_aligned_segment_starting_times() (AbfInterface method) (AudioInterface method) (BaseRecordingExtractorInterface method) (BaseSortingExtractorInterface method) (VideoInterface method) set_aligned_segment_timestamps() (BaseRecordingExtractorInterface method) (BaseSortingExtractorInterface method) set_aligned_starting_time() (AbfInterface method) (AudioInterface method) (BaseIcephysInterface method) (BaseRecordingExtractorInterface method) (BaseSortingExtractorInterface method) (BaseTemporalAlignmentInterface method) (FicTracDataInterface method) (VideoInterface method) set_aligned_timestamps() (AudioInterface method) (BaseIcephysInterface method) (BaseImagingExtractorInterface method) (BaseRecordingExtractorInterface method) (BaseSegmentationExtractorInterface method) (BaseSortingExtractorInterface method) (BaseTemporalAlignmentInterface method) (DeepLabCutInterface method) (FicTracDataInterface method) (MockBehaviorEventInterface method) (SLEAPInterface method) (VideoInterface method)

set_probe() (BaseRecordingExtractorInterface method) setUpFreshInterface() (SortingExtractorInterfaceTestMixin method) (TemporalAlignmentMixin method) SimaSegmentationInterface (class in neuroconv.datainterfaces.ophys.sima.simadatainterface) SLEAPInterface (class in neuroconv.datainterfaces.behavior.sleap.sleapdatainterface) SortingExtractorInterfaceTestMixin (class in neuroconv.tools.testing.data_interface_mixins) Spike2RecordingInterface (class in neuroconv.datainterfaces.ecephys.spike2.spike2datainterface) SpikeGadgetsRecordingInterface (class in neuroconv.datainterfaces.ecephys.spikegadgets.spikegadgetsdatainterface) SpikeGLXConverterPipe (class in neuroconv.datainterfaces.ecephys.spikeglx.spikeglxconverter) SpikeGLXLFPInterface (class in neuroconv.datainterfaces.ecephys.spikeglx.spikeglxdatainterface) SpikeGLXNIDQInterface (class in neuroconv.datainterfaces.ecephys.spikeglx.spikeglxnidqinterface) SpikeGLXRecordingInterface (class in neuroconv.datainterfaces.ecephys.spikeglx.spikeglxdatainterface) SpikeInterfaceRecordingDataChunkIterator (class in neuroconv.tools.spikeinterface.spikeinterfacerecordingdatachunkiterator) subset_recording() (BaseRecordingExtractorInterface method) Suite2pSegmentationInterface (class in neuroconv.datainterfaces.ophys.suite2p.suite2pdatainterface)

T

TdtRecordingInterface (class in neuroconv.datainterfaces.ecephys.tdt.tdtdatainterface) TemporalAlignmentMixin (class in neuroconv.tools.testing.data_interface_mixins) temporally_align_data_interfaces() (NWBConverter method)

TiffImagingInterface (class in neuroconv.datainterfaces.ophys.tiff.tiffdatainterface) TimeIntervalsInterface (class in neuroconv.datainterfaces.text.timeintervalsinterface) to_dict() (DeepDict method) transfer_globus_content() (in module neuroconv.tools.data_transfers)

U

unroot_schema() (in module neuroconv.utils.json_schema)

V

validate_conversion_options() (NWBConverter method) validate_metadata() (BaseDataInterface method) (in module neuroconv.utils.json_schema) (NWBConverter method)

validate_source() (ConverterPipe method) (NWBConverter class method) VideoInterface (class in neuroconv.datainterfaces.behavior.video.videodatainterface) VideoInterfaceMixin (class in neuroconv.tools.testing.data_interface_mixins)

W

waveform_extractor_has_recording() (in module neuroconv.tools.spikeinterface.spikeinterface) write_imaging() (in module neuroconv.tools.roiextractors.roiextractors) write_neo_to_nwb() (in module neuroconv.tools.neo.neo) write_recording() (in module neuroconv.tools.spikeinterface.spikeinterface)

write_segmentation() (in module neuroconv.tools.roiextractors.roiextractors) write_sorting() (in module neuroconv.tools.spikeinterface.spikeinterface) write_subject_to_nwb() (in module neuroconv.datainterfaces.behavior.deeplabcut.deeplabcutdatainterface) write_waveforms() (in module neuroconv.tools.spikeinterface.spikeinterface)

Z

ZarrBackendConfiguration (class in neuroconv.tools.nwb_helpers)

ZarrDatasetIOConfiguration (class in neuroconv.tools.nwb_helpers)